Usage: java -Xms8g -jar DeepRIPV1.0.jar [Flags] [Options]

Flags:
      -predict     Call peak with the DeepRIP
      -h           Print this help message
	
Options:
  Call peak with the DeepRIP
      -IP          IP sample (BAM format)
      -Input       Input sample (BAM format)
      -outdir      The output directory
      -n           The output file name
      -prefix      Temp file name. Default: temp
      -fpr         The false discovery rate for peak calling process
      -outType     The format for result files.Default: tsv (tsv, bed)
      -RepType     The replicates type, can be Technical replicates or Biological replicates. (T, B)
      -preciseSite Whether to predict precise m6A Sites from peak regions, Default: false
      -2Bit        The genome file in 2bit format.
      -T           The threshold of single nucleotide resolution. (High, Medium, Low)

Example:
  Call Peak : java -Xms8g -jar DeepRIPV1.0.jar -predict -IP SRR2120859.bam -Input SRR2120862.bam -outdir ~/DeepRIP/ -n result -fpr 0.01 -2Bit hg19.2bit -T Low -preciseSite True